[Remote] HL7 Data Extraction Analyst

Note: The job is a remote job and is open to candidates in USA. Anatomy IT is a leading healthcare IT company that provides technology and cybersecurity solutions to healthcare providers. They are seeking a Senior HL7 Data Extraction Analyst responsible for extracting, transforming, and validating clinical and administrative data from EHR/EMR systems to support CMS MIPS and Value-Based Care programs. Responsibilities • Extract, transform, and validate patient clinical data from EMR/EHR systems using HL7 v2.x, CCDA, and FHIR bundles • Interpret HL7 segments (PID, PV1, ORC, OBR, OBX, DG1, RXA, etc.) for clinical measure mapping • Troubleshoot inconsistent or malformed HL7 messages and resolve data quality gaps with vendors • Build robust parsing logic to normalize data across heterogeneous EMR systems • Query EMR databases (NextGen, eCW, Greenway, Athena, etc.) to extract structured and unstructured clinical data required for MIPS measures • Understand vendor-specific table schemas, metadata dictionaries, and proprietary data models • Translate measure specifications into SQL logic based on CMS MIPS calculation rules • Validate measure completeness, timeliness, and accuracy prior to client submission • Maintain and enforce engineering implementation standards, documentation requirements, and build methodologies • Ensure all engineering work aligns with defined solution architecture, technology standards, and security baselines • Lead efforts to improve standard configurations, automation, templates, and reusable frameworks • Partner with the Manager, Methodology, to ensure engineering processes map to ITIL practices and operational workflows • Ensure engineering quality and consistency through audits, peer reviews, and structured validation • Build scalable ingestion pipelines using SQL, Spark (batch & streaming), Python, Databricks, EMR, or OCI Data Flow • Develop metadata-driven pipelines supporting multiple clients and EMR platforms • Implement data quality frameworks (DQ checks, thresholds, reconciliation reports) • Maintain robust lineage, audit trails, and governance compliance for CMS readiness • Support MIPS Advisors with extraction of numerator/denominator data for clinical quality measures • Produce audit-ready documentation and reproducible calculations for CMS submission • Map EHR data elements to CMS measure logic, identifying gaps or vendor remediation needs • Validate that clients meet annual CMS submission timelines and data completeness requirements • Work closely with: Value-Based Care Advisors & Sr. Advisors, MIPS measure analysts, Client IT/EMR administrators, Security & Compliance teams (for PHI handling controls), vCIO/vCISO for healthcare data risk and governance alignment • Translate technical data issues into actionable insights for non-technical MIPS Advisors • Coordinate with EMR vendors to resolve data extraction failures or schema changes Skills • 10+ years in data engineering, healthcare data extraction, or clinical informatics • Deep expertise with SQL, Python, Spark (batch + streaming) on Databricks, EMR, or DataFlow • Strong experience with HL7 v2.x, CCDA, FHIR, EDI X12 (837/835) • Proven ability to query and interpret ambulatory EMR/EHR schemas (NextGen, eCW, Greenway, etc.) • Hands-on optimization experience with Autonomous Data Warehouse, Snowflake, or Redshift • Experience with cloud platforms (AWS, Azure, OCI) • Skilled in building metadata-driven pipelines, implementing data lineage, auditability, and governance • Experience with Airflow or similar orchestration tools • Experience with Git, CI/CD, Terraform, DataOps workflows • Ability to work under pressure, manage multiple deadlines, and support regulatory timeframes • Bachelor's degree in Computer Science, Information Systems, Health Informatics, or related field • Experience supporting CMS eCQMs, MIPS/MACRA, ACO performance measures, or quality reporting initiatives • Familiarity with clinical terminology (SNOMED, LOINC, RxNorm, CPT/HCPCS, ICD-10) • Experience with Delta Lake / Lakehouse architectures • Previous experience in a healthcare IT vendor, MSP, EMR company, or consulting environment Benefits • Healthcare (medical, dental & vision) • 401K fund contribution • Paid-time-off • Short & long-term disability Company Overview • Anatomy IT provides managed IT services to support, secure, and transform healthcare businesses. It was founded in 2020, and is headquartered in White Plains, New York, USA, with a workforce of 201-500 employees. Its website is https://www.anatomyit.com. Apply Now Apply Now